Here is a list of all class members with links to the classes they belong to:
- i -
- id() : pwiz::analysis::analyzer_strings< analyzer_type >, pwiz::analysis::analyzer_strings< MetadataReporter >, pwiz::analysis::analyzer_strings< RegionSIC >, pwiz::analysis::analyzer_strings< RegionSlice >, pwiz::analysis::analyzer_strings< RegionTIC >, pwiz::analysis::analyzer_strings< RunSummary >, pwiz::analysis::analyzer_strings< SpectrumBinaryData >, pwiz::analysis::analyzer_strings< SpectrumTable >, pwiz::cv::CV, pwiz::cv::CVTermInfo, pwiz::data::Index::Entry, pwiz::data::ParamGroup, pwiz::data::peakdata::Feature, pwiz::data::peakdata::Peak, pwiz::data::pepxml::AnalysisTimestamp, pwiz::data::Term, pwiz::identdata::id_p< T >, pwiz::identdata::Identifiable, pwiz::identdata::IdentifiableParamContainer, pwiz::identdata::MassTable, pwiz::identdata::software_p, pwiz::msdata::ChromatogramIdentity, pwiz::msdata::DataProcessing, pwiz::msdata::InstrumentConfiguration, pwiz::msdata::MSData, pwiz::msdata::Run, pwiz::msdata::Sample, pwiz::msdata::ScanSettings, pwiz::msdata::Software, pwiz::msdata::SourceFile, pwiz::msdata::SpectrumIdentity, pwiz::msdata::SpectrumInfo, pwiz::proteome::IPIFASTADatabase::Record, pwiz::proteome::Protein, pwiz::proteome::ProteomeData, pwiz::tradata::Compound, pwiz::tradata::Contact, pwiz::tradata::Instrument, pwiz::tradata::Peptide, pwiz::tradata::Protein, pwiz::tradata::Publication, pwiz::tradata::Software, pwiz::tradata::Target, pwiz::tradata::TraData, pwiz::tradata::Transition
- id_ : pwiz::data::diff_impl::HasID< object_type >
- id_list : pwiz::cv::CVTermInfo, pwiz::data::Term
- id_p() : pwiz::identdata::id_p< T >
- id_score : pwiz::analysis::PepxmlRecordReader::record
- id_type : pwiz::data::Term
- IdentData() : pwiz::identdata::IdentData
- IdentDataFile() : pwiz::identdata::IdentDataFile
- Identifiable() : pwiz::identdata::Identifiable
- IdentifiableParamContainer() : pwiz::identdata::IdentifiableParamContainer
- identify() : pwiz::identdata::DelimReader, pwiz::identdata::MascotReader, pwiz::identdata::Reader, pwiz::identdata::ReaderList, pwiz::msdata::Reader, pwiz::msdata::Reader_ABI, pwiz::msdata::Reader_ABI_T2D, pwiz::msdata::Reader_Agilent, pwiz::msdata::Reader_Bruker, pwiz::msdata::Reader_BTDX, pwiz::msdata::Reader_MGF, pwiz::msdata::Reader_MSn, pwiz::msdata::Reader_mz5, pwiz::msdata::Reader_mzML, pwiz::msdata::Reader_mzXML, pwiz::msdata::Reader_Shimadzu, pwiz::msdata::Reader_Thermo, pwiz::msdata::Reader_UIMF, pwiz::msdata::Reader_UNIFI, pwiz::msdata::Reader_Waters, pwiz::msdata::ReaderList, pwiz::proteome::Reader, pwiz::proteome::Reader_FASTA, pwiz::proteome::ReaderList, pwiz::tradata::Reader, pwiz::tradata::ReaderList, Reader1, Reader2, TestReader
- IdentifyCycle() : pwiz::analysis::PrecursorMaskCodec
- IdentifyOverlap() : pwiz::analysis::PrecursorMaskCodec
- IdField : pwiz::identdata::Serializer_Text
- idSet_ : pwiz::analysis::ProteinList_FilterPredicate_IdSet, pwiz::analysis::SpectrumList_FilterPredicate_IdSet
- idx_ : ralab::base::resample::Convert2Dense
- ignoreChromatograms : pwiz::msdata::DiffConfig
- ignoreDataProcessing : pwiz::msdata::DiffConfig
- ignoreExtraBinaryDataArrays : pwiz::msdata::DiffConfig
- ignoreIdentity : pwiz::msdata::DiffConfig
- ignoreMetadata : pwiz::msdata::DiffConfig, pwiz::proteome::DiffConfig
- ignoreProteinDetectionList : pwiz::identdata::Reader::Config
- ignoreSequenceCollectionAndAnalysisData : pwiz::identdata::Reader::Config
- ignoreSpectra : pwiz::msdata::DiffConfig
- ignoreVersions : pwiz::data::BaseDiffConfig
- ignoreZeroIntensityPoints : pwiz::msdata::Reader::Config
- il : pwiz::util::mru_list< Item, KeyExtractor >
- imaginary : TestDatum
- impl_ : pwiz::analysis::ChromatogramList_Filter, pwiz::analysis::MSDataCache, pwiz::analysis::PeakFamilyDetectorFT, pwiz::analysis::PrecursorMassFilter, pwiz::analysis::PrecursorRecalculatorDefault, pwiz::analysis::ProteinList_DecoyGenerator, pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled, pwiz::analysis::ProteinList_Filter, pwiz::analysis::RegionAnalyzer, pwiz::analysis::SavitzkyGolaySmoother< T >, pwiz::analysis::SpectrumList_Demux, pwiz::analysis::SpectrumList_Filter, pwiz::analysis::SpectrumList_MZRefiner, pwiz::analysis::SpectrumList_PrecursorRecalculator, pwiz::analysis::SpectrumList_PrecursorRefine, pwiz::analysis::SpectrumList_Sorter, pwiz::chemistry::Formula, pwiz::chemistry::IsotopeCalculator, pwiz::chemistry::IsotopeEnvelopeEstimator, pwiz::chemistry::IsotopeTable, pwiz::data::BinaryIndexStream, pwiz::data::CVTranslator, pwiz::data::FrequencyData, pwiz::data::MemoryIndex, pwiz::frequency::TruncatedLorentzian, pwiz::identdata::Serializer_Text, pwiz::math::Stats, pwiz::minimxml::XMLWriter, pwiz::msdata::BinaryDataEncoder, pwiz::msdata::Index_mzML, pwiz::msdata::LegacyAdapter_Instrument, pwiz::msdata::LegacyAdapter_Software, pwiz::msdata::Serializer_MGF, pwiz::msdata::Serializer_MSn, pwiz::msdata::Serializer_mzML, pwiz::msdata::Serializer_mzXML, pwiz::msdata::SpectrumIterator, pwiz::msdata::SpectrumWorkerThreads, pwiz::proteome::Digestion::const_iterator, pwiz::proteome::Digestion, pwiz::proteome::Fragmentation, pwiz::proteome::IPIFASTADatabase, pwiz::proteome::Modification, pwiz::proteome::ModificationMap, pwiz::proteome::Peptide, pwiz::util::IterationListenerRegistry, pwiz::util::SHA1Calculator
- include : pwiz::identdata::Filter
- increment() : pwiz::peptideid::PeptideID::Iterator, pwiz::peptideid::PeptideID::IteratorInternal
- indent_ : pwiz::identdata::TextWriter, pwiz::msdata::TextWriter, pwiz::proteome::TextWriter, pwiz::tradata::TextWriter
- indentationStep : pwiz::minimxml::XMLWriter::Config
- independent : pwiz::data::pepxml::SampleEnzyme, pwiz::identdata::Enzymes
- index : pwiz::analysis::PepxmlRecordReader::record, pwiz::data::Index::Entry, pwiz::data::peakdata::Scan, pwiz::data::pepxml::SpectrumQuery, pwiz::identdata::IonType, pwiz::minimxml::SAXParser::Handler::Attributes, pwiz::msdata::ChromatogramIdentity, pwiz::msdata::SpectrumIdentity, pwiz::msdata::SpectrumInfo, pwiz::msdata::SpectrumInfo::PrecursorInfo, pwiz::msdata::SpectrumListCache::CacheEntry, pwiz::proteome::Protein, SimpleAnalyzer, TestSpectrumInfo
- index_end : pwiz::minimxml::SAXParser::Handler::Attributes
- Index_mzML() : pwiz::msdata::Index_mzML
- index_not_found() : pwiz::msdata::SpectrumList_mzXML::index_not_found
- indexApex : pwiz::analysis::RegionAnalyzer::Stats
- indexed : pwiz::msdata::MSDataFile::WriteConfig, pwiz::msdata::Serializer_mzML::Config, pwiz::msdata::Serializer_mzXML::Config, pwiz::proteome::ProteomeDataFile::WriteConfig, pwiz::proteome::Reader_FASTA::Config
- indexList : isoChain, isotopeChain, precursorGroup
- indexMap : pwiz::analysis::SpectrumList_ScanSummer, rtimeMap
- indexPtr : pwiz::proteome::Serializer_FASTA::Config
- indexRange : pwiz::analysis::RegionAnalyzer::Config, pwiz::util::ReaderTestConfig
- indexSet_ : pwiz::analysis::ChromatogramList_FilterPredicate_IndexSet, pwiz::analysis::ProteinList_FilterPredicate_IndexSet, pwiz::analysis::SpectrumList_FilterPredicate_IndexSet
- indicator_ : ralab::base::resample::Bucket1D
- indicatorptr_ : ralab::base::resample::Bucket1D
- indices() : TestIterationListener, TestIterationListener_WithCancel
- indices_ : TestIterationListener, TestIterationListener_WithCancel
- init() : pwiz::minimxml::SAXParser::saxstring
- initialEstimate() : pwiz::frequency::TruncatedLorentzianEstimator
- Initialize() : pwiz::analysis::IDemultiplexer, pwiz::analysis::MSXDemultiplexer, pwiz::analysis::OverlapDemultiplexer
- initializeLarge() : DemuxHelpersTest
- initialStyle : pwiz::minimxml::XMLWriter::Config
- inner() : pwiz::msdata::SpectrumListWrapper
- inner_ : pwiz::analysis::ChromatogramListWrapper, pwiz::msdata::SpectrumListWrapper, pwiz::proteome::ProteinListWrapper
- innermost() : pwiz::msdata::SpectrumListWrapper
- inputActivationTypeArray : TestChargeStateCalculator
- inputChargeStateArray : TestChargeStateCalculator
- inputFile : pwiz::data::pepxml::PeptideProphetSummary
- inputIntensityArray : TestChargeStateCalculator, TestDeisotopeCalculator, TestDeisotoper, TestETDMassFilter, TestMetadataFixer, TestMS2Denoise, TestScanSummerCalculator, TestThresholder
- inputMSDataPtrs_ : pwiz::msdata::MSDataMerger
- inputMZArray : TestChargeStateCalculator, TestDeisotopeCalculator, TestDeisotoper, TestETDMassFilter, TestMetadataFixer, TestMS2Denoise, TestScanSummerCalculator, TestThresholder
- inputPrecursorMZ : TestChargeStateCalculator, TestScanSummerCalculator
- inputs : pwiz::identdata::DataCollection
- inputSpectra : pwiz::identdata::SpectrumIdentification
- inputSpectrumIdentifications : pwiz::identdata::ProteinDetection
- inRange() : ralab::base::resample::Bin1D
- insert() : pwiz::data::CVTranslator, pwiz::proteome::ModificationMap, pwiz::util::BinaryData< T >, pwiz::util::IntegerSet, pwiz::util::mru_list< Item, KeyExtractor >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- instantiatePeakPicker() : pwiz::analysis::SpectrumList_ChargeFromIsotope
- Instrument() : pwiz::tradata::Instrument
- InstrumentConfiguration() : pwiz::msdata::InstrumentConfiguration
- instrumentConfigurationPtr : pwiz::msdata::Scan
- instrumentConfigurationPtrs : pwiz::msdata::MSData
- InstrumentModel : pwiz::data::CalibrationParameters
- instrumentModel : pwiz::data::CalibrationParameters
- instrumentPtr : pwiz::tradata::Configuration
- instrumentPtrs : pwiz::tradata::TraData
- IntegerSet() : pwiz::util::IntegerSet
- Integrate() : IInterpolation, pwiz::analysis::CubicHermiteSpline
- integrationWidth_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- integrator_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- integwith_ : ralab::base::ms::LocalMinPeakArea< TReal >, ralab::base::ms::SimplePeakArea< TReal >
- intensity : Datum, pairData, parentIon, pwiz::analysis::PrecursorRecalculator::PrecursorInfo, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo, pwiz::data::peakdata::Peak, pwiz::msdata::MZIntensityPair, pwiz::msdata::SpectrumInfo::PrecursorInfo, pwiz::msdata::TimeIntensityPair, pwiz::util::MSIHandler::Record, RawMassDatum, TestSpectrumInfo
- intensityPvalue : scoreChain
- intensityRank : scoreChain
- intensitySumPvalue : scoreChain
- intensitySumRank : scoreChain
- intensitythreshold_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- Interpolate() : IInterpolation, pwiz::analysis::CubicHermiteSpline
- InterpolateMatrix() : pwiz::analysis::OverlapDemultiplexer
- InterpolateMuxRegion() : pwiz::analysis::OverlapDemultiplexer
- InterpolationTest() : CubicHermiteSplineTest
- interpretAsScanNumbers : pwiz::analysis::SpectrumBinaryData::Config
- interpretationList : pwiz::tradata::Transition
- Interval() : pwiz::util::IntegerSet::Interval
- intervalCount() : pwiz::util::IntegerSet
- Intervals : pwiz::util::IntegerSet
- intervals_ : pwiz::util::IntegerSet
- inverse_ : pwiz::analysis::SpectrumList_FilterPredicate_ThermoScanFilter
- invR_ : ralab::base::resample::FTMSCompFunctor< TReal >
- IO::HandlerIdentData : pwiz::identdata::IdentData
- IO::HandlerMSData : pwiz::msdata::MSData
- IO::HandlerTraData : pwiz::tradata::TraData
- ionInjectionTime : pwiz::msdata::SpectrumInfo
- ionisation() : pwiz::msdata::LegacyAdapter_Instrument
- ionMobilities : precursorGroup
- ionMobility : TestScanSummerCalculator
- IonMobilityEquipment : pwiz::analysis::SpectrumList_IonMobility
- ionMobilityToCCS() : pwiz::analysis::SpectrumList_IonMobility, pwiz::msdata::detail::SpectrumList_Agilent, pwiz::msdata::detail::SpectrumList_Bruker, pwiz::msdata::detail::SpectrumList_Thermo, pwiz::msdata::detail::SpectrumList_Waters, pwiz::msdata::SpectrumListIonMobilityBase
- IonMobilityUnits : pwiz::analysis::SpectrumList_IonMobility
- ionscore : pwiz::analysis::PepxmlRecordReader::record
- IonType() : pwiz::identdata::IonType
- IPIFASTADatabase() : pwiz::proteome::IPIFASTADatabase
- is_open() : pwiz::util::random_access_compressed_ifstream
- isDecoy : pwiz::identdata::PeptideEvidence
- IsDifferentiable() : IInterpolation, pwiz::analysis::CubicHermiteSpline
- isDynamic : TestModification
- IsIntegrable() : IInterpolation, pwiz::analysis::CubicHermiteSpline
- isObsolete : pwiz::cv::CVTermInfo, pwiz::data::Term
- IsolationWindow() : pwiz::analysis::IsolationWindow
- isolationWindow : pwiz::msdata::Precursor, pwiz::msdata::Product
- IsolationWindowFilter() : pwiz::analysis::IsolationWindowFilter
- isolationWindows_ : pwiz::analysis::PrecursorMaskCodec
- IsOpen() : pwiz::analysis::DemuxDebugReader, pwiz::analysis::DemuxDebugWriter
- IsotopeCalculator() : pwiz::chemistry::IsotopeCalculator
- isotopeCalculator : pwiz::chemistry::IsotopeEnvelopeEstimator::Config
- isotopeEnvelope() : pwiz::chemistry::IsotopeEnvelopeEstimator
- IsotopeEnvelopeEstimator() : pwiz::chemistry::IsotopeEnvelopeEstimator
- isotopeEnvelopeEstimator : pwiz::frequency::PeakDetectorMatchedFilter::Config
- isotopeMaxChargeState : pwiz::frequency::PeakDetectorMatchedFilter::Config
- isotopeMaxNeutronCount : pwiz::frequency::PeakDetectorMatchedFilter::Config
- isotopes : pwiz::chemistry::detail::Element, pwiz::chemistry::Element::Info::Record
- isotopesSize : pwiz::chemistry::detail::Element
- IsotopeTable() : pwiz::chemistry::IsotopeTable
- isotopeThresholdFactor : pwiz::frequency::PeakDetectorMatchedFilter::Config
- isRejected : pwiz::data::pepxml::SearchHit
- issue : pwiz::identdata::BibliographicReference
- isZoomScan : pwiz::msdata::SpectrumInfo
- it_ : pwiz::util::IntegerSet::Iterator
- item_list : pwiz::util::mru_list< Item, KeyExtractor >
- item_type : pwiz::util::mru_list< Item, KeyExtractor >
- iterate() : pwiz::frequency::ParameterEstimator
- iteratedEstimate() : pwiz::frequency::TruncatedLorentzianEstimator
- iterationCount : pwiz::frequency::FrequencyEstimatorPhysicalModel::Config, pwiz::util::IterationListener::UpdateMessage
- iterationIndex : pwiz::util::IterationListener::UpdateMessage
- iterationListenerRegistry : pwiz::identdata::Reader::Config, pwiz::msdata::Reader::Config
- IterationListenerRegistry() : pwiz::util::IterationListenerRegistry
- iterationsPerCallback() : CancelProgressCallback, pwiz::analysis::MSDataAnalyzerDriver::ProgressCallback, SimpleProgressCallback
- iterator : pwiz::analysis::PepxmlRecordReader, pwiz::data::FrequencyData
- Iterator() : pwiz::peptideid::PeptideID::Iterator
- iterator : pwiz::proteome::Digestion, pwiz::util::BinaryData< T >::iterator, pwiz::util::CharIndexedVector< T >, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >
- Iterator() : pwiz::util::IntegerSet::Iterator
- iterator : pwiz::util::mru_list< Item, KeyExtractor >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::VectorTabHandler, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- iterator_category : pwiz::msdata::SpectrumIterator, pwiz::proteome::Digestion::const_iterator, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >, pwiz::util::IntegerSet::Iterator