Here is a list of all class members with links to the classes they belong to:
- o -
- object_ : FifthHandler, FirstHandler, RootHandler, SecondHandler
- OBO() : pwiz::data::OBO
- obs_1_distr : pwiz::data::pepxml::DistributionPoint
- obs_2_distr : pwiz::data::pepxml::DistributionPoint
- obs_3_distr : pwiz::data::pepxml::DistributionPoint
- observationDuration() : pwiz::data::FrequencyData, pwiz::data::peakdata::Scan
- observationDurationEstimatedFromData() : pwiz::data::FrequencyData
- offset : pwiz::data::Index::Entry, pwiz::proteome::DigestedPeptide
- offset_ : pwiz::proteome::DigestedPeptide
- Ok : pwiz::minimxml::SAXParser::Handler::Status
- open() : pwiz::analysis::MetadataReporter, pwiz::analysis::MSDataAnalyzer, pwiz::analysis::MSDataAnalyzerContainer, pwiz::analysis::MSDataCache, pwiz::analysis::PepxmlRecordReader, pwiz::analysis::RegionAnalyzer, pwiz::analysis::RegionSIC, pwiz::analysis::RegionSlice, pwiz::analysis::RegionTIC, pwiz::util::DefaultTabHandler, pwiz::util::random_access_compressed_ifstream, pwiz::util::TabHandler, SimpleAnalyzer
- opened : SimpleAnalyzer
- operator bool() : pwiz::data::Diff< object_type, config_type, object_result_type >, pwiz::identdata::DelimWriter
- operator const std::vector< T > &() : pwiz::util::BinaryData< T >
- operator T() : msclr::pinned_gcroot< T >
- operator!=() : pwiz::analysis::DemuxWindow, pwiz::chemistry::Formula, pwiz::chemistry::MassAbundance, pwiz::data::CalibrationParameters, pwiz::data::CVParam, pwiz::data::ParamContainer, pwiz::data::peakdata::Feature, pwiz::data::peakdata::Peak, pwiz::data::peakdata::PeakData, pwiz::data::peakdata::Peakel, pwiz::data::peakdata::PeakFamily, pwiz::data::peakdata::Scan, pwiz::data::peakdata::Software, pwiz::data::peakdata::Software::Parameter, pwiz::data::pepxml::AlternativeProtein, pwiz::data::pepxml::AminoAcidModification, pwiz::data::pepxml::AnalysisResult, pwiz::data::pepxml::EnzymaticSearchConstraint, pwiz::data::pepxml::Match, pwiz::data::pepxml::MatchData, pwiz::data::pepxml::ModAminoAcidMass, pwiz::data::pepxml::ModificationInfo, pwiz::data::pepxml::MSMSPipelineAnalysis, pwiz::data::pepxml::MSMSRunSummary, pwiz::data::pepxml::Parameter, pwiz::data::pepxml::PeptideProphetResult, pwiz::data::pepxml::Q3RatioResult, pwiz::data::pepxml::SampleEnzyme, pwiz::data::pepxml::SearchDatabase, pwiz::data::pepxml::SearchHit, pwiz::data::pepxml::SearchResult, pwiz::data::pepxml::SearchSummary, pwiz::data::pepxml::Specificity, pwiz::data::pepxml::SpectrumQuery, pwiz::data::UserParam, pwiz::msdata::SpectrumIterator, pwiz::proteome::Digestion::const_iterator, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >, pwiz::util::IntegerSet::Iterator
- operator&() : msclr::pinned_gcroot< T >
- operator()() : DigestedPeptideLessThan, EnzymePtr_missedCleavages, EnzymePtr_specificity, Is_T2D_Directory, IsDirectory, IsIMSData, IsRawData, IsRawFile, IsTDF, IsWiffFile, MyPred, mzrtEqual, OneMinusAbs, ParametrizedCosine, PrintAttribute, pwiz::analysis::ChromatogramDataFilter, pwiz::analysis::IsolationWindowFilter, pwiz::analysis::MS2Deisotoper, pwiz::analysis::MS2NoiseFilter, pwiz::analysis::PrecursorMassFilter, pwiz::analysis::RTMatches_Any< T >, pwiz::analysis::RTMatches_Contains< T >, pwiz::analysis::RTMatches_IsContainedIn< T >, pwiz::analysis::SpectrumDataFilter, pwiz::analysis::SpectrumPeakExtractor, pwiz::analysis::ThresholdFilter, pwiz::data::CVParamIs, pwiz::data::CVParamIsChildOf, pwiz::data::Diff< object_type, config_type, object_result_type >, pwiz::data::diff_impl::HasID< object_type >, pwiz::data::diff_impl::Same< object_type, config_type >, pwiz::data::diff_impl::SameDeep< object_type, config_type >, pwiz::frequency::DerivativeTest::AdaptedErrorDerivative< value_type >, pwiz::frequency::DerivativeTest::AdaptedErrorFunction< value_type >, pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice< value_type >, pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice< value_type >, pwiz::frequency::DerivativeTest::VectorFunction< value_type >, pwiz::frequency::MagnitudeLorentzian, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction, pwiz::frequency::ParametrizedFunction< value_type >, pwiz::frequency::TruncatedLorentzian, pwiz::identdata::CVIDMatchCVMap, pwiz::identdata::CVMap, pwiz::identdata::dbsequence_p, pwiz::identdata::DelimWriter, pwiz::identdata::id_p< T >, pwiz::identdata::organization_p, pwiz::identdata::Pep2MzIdent, pwiz::identdata::person_p, pwiz::identdata::RegexCVMap, pwiz::identdata::seq_p, pwiz::identdata::sequence_p, pwiz::identdata::software_p, pwiz::identdata::StringMatchCVMap, pwiz::identdata::TextWriter, pwiz::math::Parabola, pwiz::msdata::TextWriter, pwiz::peptideid::FlatRecordBuilder, pwiz::peptideid::location_less, pwiz::peptideid::MSInspectRecordBuilder, pwiz::peptideid::nativeID_less, pwiz::proteome::TextWriter, pwiz::tradata::TextWriter, pwiz::util::TestPathPredicate, ralab::base::base::utilities::CosineInterpolate< TReal >, ralab::base::base::utilities::CubicInterpolate< TReal >, ralab::base::base::utilities::HermiteInterpolate< TReal >, ralab::base::base::utilities::LinearInterpolate< TReal >, ralab::base::base::utilities::SeqMinus< TReal >, ralab::base::base::utilities::SeqPlus< TReal >, ralab::base::filter::utilities::Gauss< TReal >, ralab::base::filter::utilities::Gauss_1deriv< TReal >, ralab::base::filter::utilities::Mexican_Hat2< TReal >, ralab::base::filter::utilities::Mexican_Hat< TReal >, ralab::base::ms::LocalMinPeakArea< TReal >, ralab::base::ms::PeakPicker< TReal, TIntegrator >, ralab::base::ms::SimplePeakArea< TReal >, ralab::base::ms::SimplePicker< TReal >, ralab::base::resample::Bin1D, ralab::base::resample::Bucket1D, ralab::base::resample::DaCompFunctor< TReal >, ralab::base::resample::FTMSCompFunctor< TReal >, ralab::base::resample::PPMCompFunctor< TReal >, ralab::base::resample::SamplingWith, ralab::base::resample::SquareRoot< TReal >, ralab::base::resample::utilities::meanfunctor< T >, ralab::base::stats::NthPower< N, TReal >, SetRetentionTime, UserParamNameIs, WriteCVParam
- operator*() : pwiz::msdata::SpectrumIterator, pwiz::proteome::Digestion::const_iterator, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >, pwiz::util::IntegerSet::Iterator
- operator*=() : pwiz::chemistry::Formula
- operator+() : pwiz::identdata::ReaderList, pwiz::msdata::ReaderList, pwiz::proteome::ReaderList, pwiz::tradata::ReaderList, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator
- operator++() : pwiz::msdata::SpectrumIterator, pwiz::proteome::Digestion::const_iterator, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >, pwiz::util::IntegerSet::Iterator
- operator+=() : pwiz::chemistry::Formula, pwiz::data::FrequencyData, pwiz::identdata::ReaderList, pwiz::minimxml::SAXParser::saxstring, pwiz::msdata::ReaderList, pwiz::proteome::ReaderList, pwiz::tradata::ReaderList, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >
- operator-() : pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >
- operator--() : pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >
- operator-=() : pwiz::chemistry::Formula, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >
- operator->() : msclr::pinned_gcroot< T >, pwiz::msdata::SpectrumIterator, pwiz::proteome::Digestion::const_iterator, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator
- operator<() : pwiz::analysis::DemuxWindow, pwiz::analysis::IsolationWindow, pwiz::analysis::PrecursorMaskCodec::DemuxBoundary, pwiz::data::Term, pwiz::proteome::Modification, pwiz::proteome::ModificationList, pwiz::proteome::ModificationMap, pwiz::proteome::Peptide, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >
- operator<< : pwiz::analysis::PepxmlRecordReader, pwiz::chemistry::IsotopeTable, pwiz::util::IntegerSet::Interval, pwiz::util::IntegerSet
- operator<=() : pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator
- operator=() : msclr::pinned_gcroot< T >, pwiz::analysis::ChromatogramList_Filter, pwiz::analysis::FeatureDetectorSimple, pwiz::analysis::MSDataCache, pwiz::analysis::PeakFamilyDetectorFT, pwiz::analysis::PrecursorRecalculatorDefault, pwiz::analysis::ProteinList_DecoyGenerator, pwiz::analysis::ProteinList_Filter, pwiz::analysis::RegionAnalyzer, pwiz::analysis::SpectrumList_Filter, pwiz::analysis::SpectrumList_MZWindow, pwiz::analysis::SpectrumList_PrecursorRecalculator, pwiz::analysis::SpectrumList_PrecursorRefine, pwiz::analysis::SpectrumList_ScanSummer, pwiz::analysis::SpectrumList_Sorter, pwiz::chemistry::Formula, pwiz::chemistry::IsotopeCalculator, pwiz::chemistry::IsotopeEnvelopeEstimator, pwiz::chemistry::IsotopeTable, pwiz::data::CVTranslator, pwiz::data::FrequencyData, pwiz::data::peakdata::FeatureFile, pwiz::data::pepxml::Match, pwiz::data::UserParam, pwiz::identdata::Serializer_mzIdentML, pwiz::identdata::Serializer_pepXML, pwiz::identdata::Serializer_protXML, pwiz::identdata::Serializer_Text, pwiz::math::Stats, pwiz::minimxml::SAXParser::Handler::Attributes, pwiz::minimxml::SAXParser::saxstring, pwiz::minimxml::XMLWriter, pwiz::msdata::BinaryDataEncoder, pwiz::msdata::LegacyAdapter_Instrument, pwiz::msdata::LegacyAdapter_Software, pwiz::msdata::MSData, pwiz::msdata::Run, pwiz::msdata::Serializer_MGF, pwiz::msdata::Serializer_MSn, pwiz::msdata::Serializer_mzML, pwiz::msdata::Serializer_mzXML, pwiz::msdata::SpectrumIterator, pwiz::msdata::SpectrumListCache, pwiz::proteome::DigestedPeptide, pwiz::proteome::Modification, pwiz::proteome::ModificationMap, pwiz::proteome::Peptide, pwiz::proteome::ProteinListCache, pwiz::proteome::ProteomeData, pwiz::proteome::Reader_FASTA, pwiz::proteome::Serializer_FASTA, pwiz::tradata::Serializer_traML, pwiz::tradata::TraData, pwiz::util::BinaryData< T >, pwiz::util::IterationListenerRegistry, pwiz::util::SHA1Calculator, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >, ralab::base::resample::Bucket1D
- operator==() : pwiz::analysis::DemuxWindow, pwiz::analysis::PrecursorMaskCodec::DemuxBoundary, pwiz::analysis::RegionSIC::Config, pwiz::analysis::RegionTIC::Config, pwiz::analysis::SpectrumBinaryData::Config, pwiz::analysis::TabularConfig, pwiz::chemistry::Formula, pwiz::chemistry::MassAbundance, pwiz::cv::CV, pwiz::data::CalibrationParameters, pwiz::data::CVParam, pwiz::data::ParamContainer, pwiz::data::peakdata::Feature, pwiz::data::peakdata::Peak, pwiz::data::peakdata::PeakData, pwiz::data::peakdata::Peakel, pwiz::data::peakdata::PeakFamily, pwiz::data::peakdata::Scan, pwiz::data::peakdata::Software, pwiz::data::peakdata::Software::Parameter, pwiz::data::pepxml::AlternativeProtein, pwiz::data::pepxml::AminoAcidModification, pwiz::data::pepxml::AnalysisResult, pwiz::data::pepxml::EnzymaticSearchConstraint, pwiz::data::pepxml::Match, pwiz::data::pepxml::MatchData, pwiz::data::pepxml::ModAminoAcidMass, pwiz::data::pepxml::ModificationInfo, pwiz::data::pepxml::MSMSPipelineAnalysis, pwiz::data::pepxml::MSMSRunSummary, pwiz::data::pepxml::Parameter, pwiz::data::pepxml::PeptideProphetResult, pwiz::data::pepxml::Q3RatioResult, pwiz::data::pepxml::SampleEnzyme, pwiz::data::pepxml::SearchDatabase, pwiz::data::pepxml::SearchHit, pwiz::data::pepxml::SearchResult, pwiz::data::pepxml::SearchSummary, pwiz::data::pepxml::Specificity, pwiz::data::pepxml::SpectrumQuery, pwiz::data::UserParam, pwiz::identdata::CVIDMatchCVMap, pwiz::identdata::CVMap, pwiz::identdata::StringMatchCVMap, pwiz::minimxml::SAXParser::saxstring, pwiz::msdata::MZIntensityPair, pwiz::msdata::Product, pwiz::msdata::SpectrumIterator, pwiz::msdata::TimeIntensityPair, pwiz::proteome::DigestedPeptide, pwiz::proteome::Digestion::const_iterator, pwiz::proteome::Modification, pwiz::proteome::ModificationList, pwiz::proteome::ModificationMap, pwiz::proteome::Peptide, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator, pwiz::util::IntegerSet::Iterator
- operator>() : pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator
- operator>=() : pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator
- operator>> : pwiz::util::IntegerSet::Interval
- operator[]() : pwiz::chemistry::Formula, pwiz::math::OrderedPairContainerRef, pwiz::minimxml::SAXParser::saxstring, pwiz::proteome::ModificationMap, pwiz::util::BinaryData< T >::const_iterator, pwiz::util::BinaryData< T >::iterator, pwiz::util::BinaryData< T >, pwiz::util::CharIndexedVector< T >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- optimal_buffer_size() : pwiz::minimxml::basic_charcounter< Ch >
- optimization : pwiz::analysis::SpectrumList_Demux::Params
- Optimization : pwiz::analysis::SpectrumList_Demux::Params
- optimizationToString() : pwiz::analysis::SpectrumList_Demux::Params
- options : pwiz::data::pepxml::PeptideProphetSummary
- Orbitrap : pwiz::data::CalibrationParameters
- order : pwiz::msdata::Component, pwiz::msdata::ProcessingMethod
- OrderedPair() : pwiz::math::OrderedPair
- OrderedPairContainerRef() : pwiz::math::OrderedPairContainerRef
- ordinate_type : pwiz::math::MatchedFilter::KernelTraits< Kernel >, pwiz::math::MatchedFilter::ProductSpace< X, Y >, pwiz::math::MatchedFilter::SampledData< space_type >
- Organization() : pwiz::identdata::Organization
- orientation : pwiz::analysis::ThresholdFilter, TestThresholder
- Orientation_LeastIntense : pwiz::analysis::ThresholdFilter
- Orientation_MostIntense : pwiz::analysis::ThresholdFilter
- originalResidue : pwiz::identdata::SubstitutionModification
- origScore : pwiz::analysis::PepxmlRecordReader::record
- os_ : PrintAttribute, PrintEventHandler, pwiz::identdata::DelimWriter, pwiz::identdata::TextWriter, pwiz::msdata::TextWriter, pwiz::proteome::TextWriter, pwiz::tradata::TextWriter, pwiz::util::SHA1_ostream, WriteCVParam
- osDump : pwiz::analysis::RegionAnalyzer::Config
- otherRelations : pwiz::cv::CVTermInfo
- outputDirectory : pwiz::analysis::MSDataAnalyzer::DataInfo, pwiz::frequency::FrequencyEstimatorPhysicalModel::Config, pwiz::frequency::TruncatedLorentzianEstimator
- outputIntensityArray : TestDeisotoper, TestETDMassFilter, TestMS2Denoise, TestThresholder
- outputMZArray : TestDeisotoper, TestETDMassFilter, TestMS2Denoise, TestThresholder
- outputObserver : pwiz::minimxml::XMLWriter::Config
- outputSamples() : pwiz::frequency::TruncatedLorentzian
- overallPvalue : scoreChain
- OverlapDemultiplexer() : pwiz::analysis::OverlapDemultiplexer
- overlapRegionsInApprox_ : pwiz::analysis::OverlapDemultiplexer
- overlapsPerSpectrum_ : pwiz::analysis::PrecursorMaskCodec
- override_ : pwiz::analysis::SpectrumList_ChargeFromIsotope, pwiz::analysis::SpectrumList_ChargeStateCalculator
- overrideExistingChargeState : TestChargeStateCalculator